NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334957_003306

Scaffold Ga0334957_003306


Overview

Basic Information
Taxon OID3300034140 Open in IMG/M
Scaffold IDGa0334957_003306 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 53SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3963
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068443Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334957_003306_3134_3919F068443GGAGLRATRRRQRRVDPLASPGAVRSVLGSLRAALPDLIPHEDKELVSLLRAARHARRYPATDTRRGRPGRWGREELLQVAARLDDIIGRETTSHVSFASFVDHYLRLLDFPADVVGALEGGEINLFEAEQLARVTARRLGVTSGRAKRTRAELLSSHLQTKASGSGLRQRVDELLRAPVTEAGEAAGSQSAPELEDLEDFDPYDPTHLFWEQLKQLGFAFRDIRREDVADEEVEELLKASEPILTILNRIQRRRAQAKVIKVKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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