NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334964_000050

Scaffold Ga0334964_000050


Overview

Basic Information
Taxon OID3300034146 Open in IMG/M
Scaffold IDGa0334964_000050 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 60SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)110809
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043603Metagenome156Y
F065095Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0334964_000050_14309_14602F065095AGGAGMDQDQKQHIEVAISRARDGVGDRIDELDRTLRAQLDVKSKASEYAPQIIGAGAVVGLLVGFGMPKIFRRLVTWGVPIAILAATIKNARSSEGDDLGY
Ga0334964_000050_56597_56767F043603AGGGGGMNNMAQTRTSRLETALSANFALPGVLAVNTVALLALDHLGGIPSWIKTAAALFLAF

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