Scaffold Ga0334964_000078

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334964_000078

Scaffold Ga0334964_000078

Overview

Basic Information
Taxon OID	3300034146 Open in IMG/M
Scaffold ID	Ga0334964_000078 Open in IMG/M
Source Dataset Name	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 60SNS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	86253
Total Scaffold Genes	88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (63.64%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.3778	Long. (^o)	-117.6098	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001931	Metagenome / Metatranscriptome	615	Y
F013963	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334964_000078_68150_68473	F001931	N/A	MSDEGLQQQRADILSGVVTTLLDDLKNGVGDKDRRRQVEEWMRTLAEKYPEFHIEVGLRDYYLAEASRLRGDFDKAPDLTEKLGLGRSIESFLDRAADYDRRIRDRG
Ga0334964_000078_75176_75412	F013963	GAGG	MNYDLAMMALEGLTRQPMRVTVEGGEVVLEAHPASFKELARLCLLLGGVQTAEDAFELTPGVHVEDGSPLLRLRLRSD

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