NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334964_000078

Scaffold Ga0334964_000078


Overview

Basic Information
Taxon OID3300034146 Open in IMG/M
Scaffold IDGa0334964_000078 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 60SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86253
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001931Metagenome / Metatranscriptome615Y
F013963Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0334964_000078_68150_68473F001931N/AMSDEGLQQQRADILSGVVTTLLDDLKNGVGDKDRRRQVEEWMRTLAEKYPEFHIEVGLRDYYLAEASRLRGDFDKAPDLTEKLGLGRSIESFLDRAADYDRRIRDRG
Ga0334964_000078_75176_75412F013963GAGGMNYDLAMMALEGLTRQPMRVTVEGGEVVLEAHPASFKELARLCLLLGGVQTAEDAFELTPGVHVEDGSPLLRLRLRSD

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