NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364929_0099909

Scaffold Ga0364929_0099909


Overview

Basic Information
Taxon OID3300034149 Open in IMG/M
Scaffold IDGa0364929_0099909 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 20_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)914
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036447Metagenome / Metatranscriptome170Y
F037392Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0364929_0099909_258_458F037392GGAGMNTRMIILLAFLAALWIFGLVGQFHSAEAGMRYLALSMVILAVGVWRWQPRPALRRRTRDRQRPPE
Ga0364929_0099909_3_254F036447N/AALTSSTAASASADDPALQNIEALGIREPDRWQGRHHYLYDDEYQPGSATVGSAPSGARACSNEPVRLRRSDGSTVVRRFRRCD

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