NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370498_002239

Scaffold Ga0370498_002239


Overview

Basic Information
Taxon OID3300034155 Open in IMG/M
Scaffold IDGa0370498_002239 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4513
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.8349Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002416Metagenome561Y
F009773Metagenome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0370498_002239_1544_1966F009773N/AVRFGVADSDWFTVLLISCAGYLVPVPLGFTVLYVPLQMWTWLLATAGTIAFFNCIRIGRRPRWLQHKLKALFFHHRHCRSLPNGKTRRFTRPWIVDADAAEQTEQQPATATGQVRLLLEDHNHFQEACEEKWNAVLLTTN
Ga0370498_002239_967_1440F002416N/AMKDAKQSRDERKEKCKMNTFNQLISFPGLENSRAARLGRRLIAIAFGIKSLPGVMAAVLMMVLGVVSVSAQTPSGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGVCAAVYAFSQGDSVPLDNTF
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