Basic Information | |
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Taxon OID | 3300034163 Open in IMG/M |
Scaffold ID | Ga0370515_0000425 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19088 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 64.9123 | Long. (o) | -147.839 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001759 | Metagenome / Metatranscriptome | 640 | Y |
F002337 | Metagenome / Metatranscriptome | 569 | Y |
F008209 | Metagenome / Metatranscriptome | 337 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0370515_0000425_5967_6506 | F002337 | GGAG | MNLAIVLVIAAVLALATILSVAVTRSLQVRGSAGLPETIRPIDVEAFRNLINPAEDLYLRRRLPSAQFRVVRRQRLRAMQAYVQVAASNAAVLVRAGQAALASGDPRVTQAAHELVNDALLLRRNATIALARIYLALAWPNSGFAAVRVVDRYEQLSGAAMLLGRLQNPAVPVRLSALL |
Ga0370515_0000425_7370_7546 | F008209 | GGGGG | MKVSRFAFSNKEKTIVKRLLLVIAAALMLVNTLVVPTVAHADGGTGTTNCGGNTICKP |
Ga0370515_0000425_7621_8064 | F001759 | N/A | MTLKSALQDLRETTLAAVSGLLAKLAYLGSLRRREGGYLHWGMSLVHGEEAAERALKSAHTEVLSNVLRTPIPALVEDLRESSRHSEKTAGAYVEGMRGQFSELLPVPEDAASARHLNSVLVALSSLEKSQKRATPSASSPPLPPAR |
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