NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370515_0031126

Scaffold Ga0370515_0031126


Overview

Basic Information
Taxon OID3300034163 Open in IMG/M
Scaffold IDGa0370515_0031126 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2412
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9123Long. (o)-147.839Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003563Metagenome / Metatranscriptome479Y

Sequences

Protein IDFamilyRBSSequence
Ga0370515_0031126_1258_2313F003563AGGAGMNTTGFVKSAGALAALAICSACAGAVPLSLSKGQGDMTVAPSNAALNGAYIGRTFSVNGRLVTAAHPNLSALPRYATIVPDRHAKSKTFEYIINDYGTYASIFDYPKSDKQIGSITNVGGQGCTNVLYGYGKKTFWIVAGPDQITEYKVPQKPIKTLSVSVGNPSSCAMDTSGDLAVGILYNVSGPGGGDIVIFPHATGSGTVMTTPLAREYFDGYDNQGNLFFDGFTGAYNFALLELPKGSNKIQTITTSNTVEFPGSVQWDGTYLTVTDQEADAMYQYTVSGTTATLKGTVSLSGASDCAQTWIATGVVFCADAGDYGAEVYKYPAGGSPIAVFTGNFDLPLGAVASKK
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