NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364942_0174487

Scaffold Ga0364942_0174487


Overview

Basic Information
Taxon OID3300034165 Open in IMG/M
Scaffold IDGa0364942_0174487 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 19_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)701
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_2_20CM_70_9(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056437Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0364942_0174487_1_699F056437N/ADVTADSVSHRFAFLEPLPGPVAGAIAVVRRGRIYVIGGADLQGRPQRAVHVGRIGADGHIDGWYQQPPLPGPRAYGGGLVRDGRVVAIGGVADSVPPGGGLDAAPQRLVTSDTAPLSLVSGFFTGPWGSGPTLLPEGRSQFALLDLGSAVLAIGGMYGGAAANAAETIAAAVTGDSLGTFTGPVGSQQIWTQQCDGQAAGTLVGPAGVTWREADGTAHGLVLGGIDLVTQLRR
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Institute for Fundamental Biomedical Research
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