NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0010671

Scaffold Ga0335017_0010671


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0010671 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5113
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002935Metagenome519Y
F025743Metagenome200Y
F093851Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0010671_3611_4036F002935AGGAMRERSKGYIGQIVDGKKLATIANSIYDLQYSGGASNCTVDNLLLVTLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVETVKECLTDQTEDISDYIRTFGDRLDNNCSLWQSKMSDPSVMIEA
Ga0335017_0010671_3_233F025743N/AMETMKFVYADLLTPSQLMEGDLINIDDEIVEVVSVVDDATGDNYIITHRNDYGEEEETLCTYEDMFKLYVFIDEDE
Ga0335017_0010671_4194_4352F093851N/AMLGYIRTDVDDMVYALDSVLTTINSDDDPWLYNNTWRAKELLQGLQVEGYFD
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