Basic Information | |
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Taxon OID | 3300034167 Open in IMG/M |
Scaffold ID | Ga0335017_0014245 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4510 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002162 | Metagenome / Metatranscriptome | 588 | Y |
F002357 | Metagenome / Metatranscriptome | 567 | Y |
F007469 | Metagenome / Metatranscriptome | 350 | Y |
F105165 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335017_0014245_2614_2784 | F002162 | AGGA | MPNYEYECDREGLSIVLQLPMEHEIPLCQGCGFELSRVYTAVPAIFKGKGWAGKGG |
Ga0335017_0014245_2777_2977 | F007469 | AGGAGG | MGELQIIDGSGLTATFTDDGVKLEPSTIKCDTCNDDRLLHEGDLLRCYVCHTINRIPYPVNRNLNA |
Ga0335017_0014245_2978_3640 | F002357 | GGAG | MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGFILVQATLWRDATDSAPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKAGSKSAQIETILRDSFEADKPKDPVAWSVGDVVDQIAASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKACEPKWAKLTANGKWYFEGGE |
Ga0335017_0014245_3916_4116 | F105165 | GGAG | MTAKDDMLQLAWIFMGLGIGAWIIHEIKLSAQNRYYWIGRKDGWNMHRRMIDNKAKSDEVFDYDKN |
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