NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335061_0020670

Scaffold Ga0335061_0020670


Overview

Basic Information
Taxon OID3300034168 Open in IMG/M
Scaffold IDGa0335061_0020670 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3494
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035758Metagenome / Metatranscriptome171Y
F043388Metagenome156N
F048171Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0335061_0020670_2329_2685F043388AGGMAYTDFLNEALDDLVSTLQTIPNLRVVNDPRNIAPPCAFVDAPSIESWNYNIVTMTFPVTLISNGPGNLDALRQLLNLTSLLVLKNIAVMSASPKVVTVGGADYAGYELIIPMQAQNG
Ga0335061_0020670_3326_3490F035758N/AMIITNASKAFEYYESIRGIMSVEQPSTLSRLFSVHAYVSTFAAVGSMIRKITQA
Ga0335061_0020670_794_1303F048171AGGAGMSISVDGLESTLKTLKKVKPEVQKQFFKDAKKILKPVIDEAKNLYPYGDPTKKNGAWPSGISRTWAPGGRGLFPYSQTAAVRGISVKTSLSKKNDAVLTIVNKDAAASIVEFAGTNPNRLADALNGWGNKPRVMWRAYENNAGKVEAELAQSVDEVMKQISQLTKALVL
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