NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334925_000009

Scaffold Ga0334925_000009


Overview

Basic Information
Taxon OID3300034173 Open in IMG/M
Scaffold IDGa0334925_000009 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 21HNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)219628
Total Scaffold Genes176 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (48.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F084700Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0334925_000009_27575_28087F002324GGAGGMGEIRLFQICYEGDLTAEVSHVMRRLGADPNFDQSWQVFLPEGRHSAALVRYLRANLATDARLLVACMQFTTTRDFLLVRHSLTPGADYSELHDALLRLGTVVELPFESTFVIQSDDRTDVQTLGAALAELCPDESLMITGISHDWAYCNAGTSRMFVGDEEQLAEFKTF
Ga0334925_000009_58647_58868F084700GAGMKALEFDAMTAVHLPMSERVLDKLADILFATDEILDMLRLQEERLPDDTTTAVEESVKHVYEQVNELMKKLTD
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