NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364932_0008464

Scaffold Ga0364932_0008464


Overview

Basic Information
Taxon OID3300034177 Open in IMG/M
Scaffold IDGa0364932_0008464 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 17_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3871
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F060690Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0364932_0008464_3078_3464F060690GGAGGVKALTRNTLLAVPLALLFFLTLPRQGALGWDLLDDFTLAFVFTYVGYWVEVLLLKVPGIETGTGFLVRLLGWFAGGLWCYELGRLALLAYGRDTTVLPPLLYGGIWFVALQIVLHVLKPRGAPPPRPV
Ga0364932_0008464_827_1084F000195N/AMDLNVTRQQYDAVRNAKHLPDVLKKVLDGAKRDGNGHVLHLTYEEATALNELCSWNVHTDESGAVTPDSKVYDGLVRAIMTHPEF
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