NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0364932_0011485

Scaffold Ga0364932_0011485


Overview

Basic Information
Taxon OID3300034177 Open in IMG/M
Scaffold IDGa0364932_0011485 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 17_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3334
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032613Metagenome / Metatranscriptome179Y
F066750Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0364932_0011485_2312_3334F032613N/AAAPVTLPQPPRSSRDDAEDSVVASGWIARQGMRVLWSRFTPQSFDSLLEFVDVAALNALATVIPVPALADTLGTRNIWRVTAERLQTTSIRWFPAVSLVAIPSQGADEVNRHGDLTPIACGLDSMFWRGALRPTYRTLARLGGARPDVIAGIAVDLDSAMTHFGGSGFCDADYRVGLSALGLDPAETERLAALPPAARYDTLLERGWLKRYFDALQAAVTERAITLRGELRRLHPDLRYAFHAADVPADWFSLGLLRGFSTQDAPALLWLKERHGRALLRLYRDREIYALSALSLQPDRTTFAPGELARLRSYVFGENTGFWLDGAATDSLGRVIRRFTK
Ga0364932_0011485_802_1500F066750N/AMHQVIHIEQEFQGMRQPLDFGLRIFFAVTINGPADSTGYPTTVTIDSVAPDSGTTAPMGINLGAARALSFAGRLTPTGEFRNQVASDSAAAQSLSPIVGSFKNFFPRLPPSGLTLGATWTDTITTSDRAAGNVTVTSISRSYAAAWEDRNGARAIRLEVVSNFTIKGGGEQGGQPFEVAGTGVRNGVDYVAVDGRYLGGESHDSTNMTITLPIQAMTIPRTQVSKTTVTVLP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.