NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364932_0037820

Scaffold Ga0364932_0037820


Overview

Basic Information
Taxon OID3300034177 Open in IMG/M
Scaffold IDGa0364932_0037820 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 17_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1813
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046941Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0364932_0037820_942_1658F046941AGAAGGMKTQNVIAALVAVLLLNACAGSSNRITEYLAGFPPQPEKPPQVALPLAVGLVVALPEDELSKPTTPSKDTLEKVAQRIQAELQASPQITIQRIFSALTIPAGGLRGLALEQVQALAKESNLTKMIVVVATSQSARKLRFWPIMENQLYVRMDAALVDVPKGAVLMTEFGQDDYVMAEAVDYVDRISFPRLYYRTFTVAGPFTIVEGDPYHALGWETFKGAADQLGMKLRQRLSPAGIP
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