NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370501_0001494

Scaffold Ga0370501_0001494


Overview

Basic Information
Taxon OID3300034195 Open in IMG/M
Scaffold IDGa0370501_0001494 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5620
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9096Long. (o)-147.9451Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042484Metagenome / Metatranscriptome158Y
F086979Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0370501_0001494_2904_3650F042484AGGAGMRKPISLRGCLLAAIALTCFCAASWAQGNIRTVLLIKVKMGQDENWKSAVKDYVAVVKKAGSDQGFTVWESQSGPPQHAVVWYSSKWKEMDEQNPKLKPVEADLARLFARLDTVTDSLETWIDEMQPDMMIRSKDLPAMVRVGRTRVVSGKMDELKGLFRDQIVPAVKKSGATDYGVAVARFGTPSNEIHSYLGLSGWADLDAPIGAEKGMSAAEFKAFQSKLAPLIESSEWSMWKFEPELSYIPAAK
Ga0370501_0001494_698_1078F086979N/AMLKYEFINKEWIVSPTAGRVYRASAALSVALFFGWCIILFVGGIPPTIAPLVRLFLLAGVLEAGITFVGMEFFLFRFDDSHPLKQIVWFVVMLFPLLGPALYCFIVYSRSNALRSTYPKRAEGAPL
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