Basic Information | |
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Taxon OID | 3300034195 Open in IMG/M |
Scaffold ID | Ga0370501_0002767 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4344 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 64.9096 | Long. (o) | -147.9451 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005654 | Metagenome / Metatranscriptome | 394 | Y |
F052068 | Metagenome / Metatranscriptome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0370501_0002767_3643_4110 | F005654 | N/A | MNEIASRQRHRAATEKPLSNPQYSLKDFQLEVLDRLTEMQNMAASQEAAWSEELDRVKDQRLLKFDSRTLIALGAITLSLAGYVIQEARSTAKQDSELESTKARVMRLEQIASTNTEARIRTEVQLGELRDGQAEIKALIQAHDNASKKRPVGAQ |
Ga0370501_0002767_4107_4337 | F052068 | N/A | VDVGVSPDAGFGVEVRARDYNWGKTNDRNLFGRFSTQTFVLPRLTRTQNYFLRLYDSSSPPRYSRFSAALHVDYPL |
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