NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370514_111748

Scaffold Ga0370514_111748


Overview

Basic Information
Taxon OID3300034199 Open in IMG/M
Scaffold IDGa0370514_111748 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)699
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9123Long. (o)-147.839Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014282Metagenome / Metatranscriptome264Y
F028867Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0370514_111748_3_416F014282N/ALNRRFGRLQIDGGNSMKPKLFSLLALVALFGATLILNSCGGGAANCPVCGTDKNGTIGLIDVMYVPEHNPNGEPGGPFNIFDISWVDPVNRLYYVSDRVGLDVPVFSTTSDIALWAIGGDNSIAEAGDNASSCWVDTS
Ga0370514_111748_493_699F028867N/AVPACPITPSIVPGFSDHTDQLTVGFNWYLNYWVLVKSDFNLNQLKDPSVQGILPRNYFVFLEGLQFRF
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