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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034200 Open in IMG/M |
| Scaffold ID | Ga0335065_0000444 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29967 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (19.61%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005814 | Metagenome | 389 | Y |
| F006463 | Metagenome / Metatranscriptome | 372 | N |
| F007860 | Metagenome / Metatranscriptome | 343 | Y |
| F009004 | Metagenome / Metatranscriptome | 324 | Y |
| F009958 | Metagenome / Metatranscriptome | 310 | Y |
| F019965 | Metagenome | 226 | N |
| F034772 | Metagenome / Metatranscriptome | 174 | Y |
| F068744 | Metagenome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335065_0000444_1890_2174 | F006463 | N/A | MNTGTIYEQMDWWQRQWRGSFDLGLYLEICRIKKNENQIQKPMKRFKATFKTYAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIILEIKQIEK |
| Ga0335065_0000444_21465_21629 | F019965 | GGA | MNDLEVMMQCVQIYIYKKKGVKVRIYLRDIRDINLLKQAYDYIQKNEHNKTANN |
| Ga0335065_0000444_2171_2503 | F009958 | N/A | MENRNLEFWNKGWELTYEFLGWQYSIAGTWEFKDYDEVSEFAFIELDVEVSEKWIIETDDHLQPHIINIRILEDVRLEMQEAINSDLQHYNFWEWKTSNDESNYNFYHEL |
| Ga0335065_0000444_2505_2642 | F034772 | N/A | MKNLIDYFTPTTEEHKSFLNHFLGTLTAFIVFGGMFYCLMYLKAL |
| Ga0335065_0000444_2647_2811 | F009004 | N/A | MKTEFSKVIDFLELQQQENKLNTNQLHLIIQTLCTFLDDEQLKEVENLFNQFKK |
| Ga0335065_0000444_29224_29514 | F005814 | N/A | MELELLSSRINLNHICLKMQVSIDEIKTKHPNRTDLITSMEQSLYEIKKAMVVYQTLEKEFRATRQINFDLQRINLEQMQEIQNFKRQIELNNMEL |
| Ga0335065_0000444_29516_29944 | F068744 | N/A | MTYEGNYQFMNAARQFVNKTGMTIYINTHPNTESGRSSNIYTEGDFKGHLKAPLKDHVEGGKAFTNRCDDMIVVHRLIKHDVMKYVTWVSTEKIKDVDTGGKHTGLNDPVYCEYNYGLGFKVYGKDVISEFRPTNNINLKPF |
| Ga0335065_0000444_5684_5848 | F007860 | AGGAG | MKSNYLATAYFIAGFLTSFSLICQGTEPYINLAGVTLFFYLTFSLTEALEDLGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |