NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334938_099927

Scaffold Ga0334938_099927


Overview

Basic Information
Taxon OID3300034236 Open in IMG/M
Scaffold IDGa0334938_099927 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 34SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)570
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015929Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0334938_099927_3_524F015929N/AVIYEAKTFDRMGETTQTMARTSQESARIFTDYTVKAQELNTQLARRTVETWIDGMRKQTELSQETAQQIFGKAEEQADVYRSFFGQRGNAPAMRFPFAGMANDMMFPFQKQGMRLVETATFPIAGYDDKNVDEISARLDGLSAEQIQHLRSYEKAHKNRRSLIERFDSKLRAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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