NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0000164

Scaffold Ga0335049_0000164


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0000164 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43600
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (70.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F010831Metagenome / Metatranscriptome298N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0000164_18349_18735F010831AGGAGMGMYIQWKDDKNKQSFKPKVWTPMVLNGKDAIVPTQEGHCFWEAQLHLTLPKTGRPTYVKMNYSRDYKGKNDTTGTNTYAVPDGIESIQFTLSWFFNAKPDTPISCMVYHNGAAPIVSEIRQFKGLIL
Ga0335049_0000164_25293_25469F000264N/ALTRARGSGKMKLYTSEVWLKKRYQVDKKSPEQIAKECGTSVETIYVYLAKFGLRKSKR
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