NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0000196

Scaffold Ga0335049_0000196


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0000196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41286
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (51.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058094Metagenome / Metatranscriptome135Y
F082584Metagenome / Metatranscriptome113Y
F105022Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0000196_26636_27004F082584N/AMATVIKLLRSTVPGRIPTAAQVAQGSLALNLADRRLYSKDHNNEVFRIARPRDPSDYLSLSATDGTTLYIGRLAWDDYPASGPAEDSTAWTIYKISTNSAGDVVSEQSAVGQWSNKTSLSYS
Ga0335049_0000196_27969_28235F058094N/AMSQVFFNPFSGAAQNIALPQLDSSGQISGSMIPDDFDDVQAFPTLEDFPNPGTVARIYFPQDSNIPHRWDPDTLSYLPIASDADGGEF
Ga0335049_0000196_34385_34666F105022N/AMFNLKKTTRYMLPDRLNEDDMTTALCMPGSKPLVVQAVLQVLRDHIDDSVELVGSIKTATEHGQLAHCAGALDALRGLESDLLQRIDEASKKM
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