NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0004196

Scaffold Ga0335049_0004196


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0004196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10639
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F012108Metagenome / Metatranscriptome283Y
F037567Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0004196_3932_4639F000325AGGAGMMKVANGNDKLGKGCLVVSRPVGDTCPPTCVYLGDGCYAEQTEKMYPNVRPAGMMNLITEKNRIRAMILEAIRKEKSIRWHERGDWFKDGQLDLDYVANVTWACESIMADGTSLPDMWFYTHIYDSRLVAFEKYMNVYASVHNDNDMNEAKAQGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVVLNDTKFITCPEIRRGRGVVTCTPTEGSVDCNLCVKGLANVLFPSH
Ga0335049_0004196_5228_5494F006543N/ALEIIKMKKFAFVVDVVADELDRESVADSIRECLTDALPSDVHASVKSGEVKAFSEQGYKVWRARVTGVTAEQAGDSANPKKVKETVEV
Ga0335049_0004196_5749_6120F012108AGGMINLQLSVREAFELSNNCSREIYEKIVNSFEIALGVNQHRTVTITGGMTLDNRIKCIKAIRLHTGWGLKESKDWSDVLVGGWKYDTFVPATPGTKNSVTLGTPEAAENLLRDLVDKGCEGYLS
Ga0335049_0004196_7062_7322F037567AGGMMEWISFFGPRRPINGQKVYYFGEYIGVWQGRYEIHKDDPVSEHILICEESPGIVDRMDAPWWQPYEGQPKPKRPETDYPKDYPHG

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