NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0005321

Scaffold Ga0335049_0005321


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0005321 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9525
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022399Metagenome214Y
F023329Metagenome / Metatranscriptome210N
F084156Metagenome / Metatranscriptome112N
F093851Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0005321_3229_3486F023329GGAGMVNEDEIKDIKQLEAFFKYNIPNDEILSGRLKILMADLSWQMELPTWTKEELDVMCARMDALVEISNLLYDIQWHKQNWERKQNA
Ga0335049_0005321_3899_4063F084156AGGAMTDLCWYDTKQGDNCQWICSDIPGSFYCKNCDGLRVWNRFAQAYSFYVREGHYA
Ga0335049_0005321_4056_4223F093851AGTAGGMSDYKYLDTDLDDMIYALDSVITTINSDDDPWLYNNTWRAMELLKGLKVKGFGND
Ga0335049_0005321_4216_4476F022399GGTGGMDKKYKSIYIKNGLEVFVNPEDYWADYKVRLNGYHAKTFKGETAWMDVTRFVHDQAMEFWDFNTDGIHRQWQQDIMAELESRFANE
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