NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0082428

Scaffold Ga0335049_0082428


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0082428 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2358
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023520Metagenome / Metatranscriptome209N
F028417Metagenome / Metatranscriptome191N
F031075Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0082428_2037_2357F028417N/AIENFLPSEPRPAPEGMAIYLYELKKEIIKHDPEFKFINSYNDYIFRTLTLLDYLDVSKEYDTEDHGKTIRMICRETRDIRRIDPLWKMDKNSGIEFINSTSSISTK
Ga0335049_0082428_2_472F023520N/AMATTKEEKYAKGCDAKTRDKRIESIDNLLSAINLIFIQNTFEEEDDDTALLHHLYKSKLKALKVKPKLTLINETHSLISKILEGVDGIDTSKEWDHQDNKSKFAEIKQYMTELRLCYPLWKLNRYDIEKYSTCVCPNCDSIEIAGEKTLEKLGELTL
Ga0335049_0082428_992_1540F031075AGGMSQEKLKPEGEVTNREGTSEDCDCGPHSCYCRVNKEYEKSTKIRSLTHLIGLINFMPPFDGPLSYRPFERLWSLKKQIKEIDPNGLLADEITLLEHQVLNQIDVIDINVSWNSVRNKLRYIDLYQTITKLRTIHPDWQMYLEDSKNHHFCRCCSCSEVRRLYQEELDDTSSEEPNSDEENKK
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