NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0006633

Scaffold Ga0335052_0006633


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0006633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7245
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090288Metagenome / Metatranscriptome108Y
F097220Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0006633_2768_3595F090288N/AVDLGTGTLLALIAALSAIFTTAAVLHAVLPWGSFTLMRLLHALINGVTIFLIARVLVRRARQHPDWISITGTIFAVGLLPLGLLSLAVDAFTFFGIPVGASPALGVNPADALLAALYLAALLPALFFGHALLRSESARYRPIERRFTEFFAAFGVGSLAAIVVPLATTRLYDTLQTCTNEYVCTRPPGEWVVIGLLTGLTAWRLIRGAEGAKQPLLWIGALPPLVTTAVAINWYLPAWLGGLPIAGALIAFGGLLLLRRATMEPAPRSRRATKRR
Ga0335052_0006633_5610_6176F097220GAGMIDEPKESPRGIVQIAATISNGLLGVALIAAGVLGLVAIAVAAADIADQTWVSLGAQITTELGTDVETLFETFQIDIAVILTTLADQNNLPEFGAWVRQILAMLMVAAVALGLAGAAPLWVARALWSHRSNRAVLLFGVVLSAVGVIGLLVTGAPQFIWGLVLANGLLTLVASRTARPPVLRAESAQP
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