NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370492_0019768

Scaffold Ga0370492_0019768


Overview

Basic Information
Taxon OID3300034282 Open in IMG/M
Scaffold IDGa0370492_0019768 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2761
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)63.8785Long. (o)-149.2588Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001558Metagenome / Metatranscriptome671Y
F008980Metagenome / Metatranscriptome325Y

Sequences

Protein IDFamilyRBSSequence
Ga0370492_0019768_104_442F001558GAGGMLRVQTQESDGALICRLEGRFTGKGAEEVRTLVTRCDSKLELIVDLTDVMFIDAIGEEVLSFVKRLGTQFVAETSYSRDVCERLQLPLIGKRKSSVRVPGDSDGNGHRPRRR
Ga0370492_0019768_758_1318F008980GAGGMMGAAGRNLPEPPAREYVGRVFSQHREELEWLANFLTGDETIAAACLVDACALAESENPGFQEWLLNCACLATIRSAVQIQQRRIVQLSFAYKQRPCIHGGHTALSSDWREILVEESSVVIAKLDVLCRAALVICGLEKRSACEAAALLGIEPAGVEGAYCAAIKSLEVISCEQFRRRHDFAAVCN
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