NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370492_0130683

Scaffold Ga0370492_0130683


Overview

Basic Information
Taxon OID3300034282 Open in IMG/M
Scaffold IDGa0370492_0130683 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)63.8785Long. (o)-149.2588Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F010114Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0370492_0130683_204_377F010114GAGMIIELNNDETRLLHTVLLEQAQEHLSYADTSEVAERLYKLATRFERRVREVPNATTA
Ga0370492_0130683_377_961F001596AGGAGMSWFHSSTTPVDARNHASPAEVVACFQDQRNLLGRLAFLITGDHATAEQTLVQACETTLQGNRPFRDWLFEWAKAATIASAISHGAKAIRICEATYTEQRCLHVEHLSQGDAEERAAGLDLVLGTDAQTLIAELDSLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHAMTWLQKRREKPVEENHILARV
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