Scaffold Ga0370492_0228807

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0370492_0228807

Scaffold Ga0370492_0228807

Overview

Basic Information
Taxon OID	3300034282 Open in IMG/M
Scaffold ID	Ga0370492_0228807 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	757
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	63.8785	Long. (^o)	-149.2588	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015924	Metagenome	251	Y
F049150	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370492_0228807_442_756	F049150	AGGAG	MNPLYHAKKSDGRWLVRTVAFLMIGLPAAAQQVNVSAPLSADEVMGRVVEKNEVRAKALESYSSVRSYHLECHCVSHKKADMVVRTDYQAPTKKEFTIVSESGSG
Ga0370492_0228807_65_445	F015924	N/A	MSMAYYLQACGRADLRIVPLYDTHYAPRDGDLIVLEPSRRFFETQRFFDALGNSGMPHSDVRVGPVLASTIYLFDPSAPGLKSVKEELTLTQLRGSPTRFENDASERASANTSRFGLSDRTRRLIQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.