NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0000001

Scaffold Ga0335007_0000001


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0000001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)968418
Total Scaffold Genes865 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)161 (18.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042756Metagenome / Metatranscriptome157N
F062455Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0000001_33607_34137F062455N/AMKNKTITAISAGTSYSMLKLTDSSLDPYTRFTAGLAVGSAIVLKRGDENPAALFLGIGILIGSAFQLIDVVKGGRLIRNKCNFPVHIIGENGGLSVLEYGQVPAGNIDGFTFKGLNGVFKLSDGIYAKINSNNSIQYTPGLGRFINQNLRNGGFKTKHWVDQQTDLRWKELYDRSI
Ga0335007_0000001_34350_34874F042756N/AMKKKQLTITTSSAVSYAGLKTLENKIDPFTRSSLGLLATLGLSLSENQTTRNIGFGLGIASLLQLLDIKKGGKITRNDSNIRFYILDENQGVTILEPGQTPSVSIDGLTFKGLNGVFKVSDGVYVELGKDSSINYSIGFGKLINQNLRDGGYKSKQWVDQQTDLRWKELYRKSI
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