NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0000036

Scaffold Ga0335007_0000036


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0000036 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86732
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (21.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023065Metagenome / Metatranscriptome211Y
F036563Metagenome / Metatranscriptome169Y
F067544Metagenome / Metatranscriptome125N
F098950Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0000036_58574_59215F023065N/AMYTNSELIGRVKSANKFVSDDDLISDRYIYGLLKTKASTLLRREINLRRLLTSDNVYQAYECVHLIEAKGSECDLGCPVRRTKNKLPSIDEGLYSYFIQGVFNTSNSEELFPTTIRDFINHSRLRFKTPKKYYTIRNGYLYVLDPDVECVNMYAYFTESIEDIDGTECLSMYDKQFKFPGYLTDALIEMCTQSLMNYQRIPQDLEDNNRDEPN
Ga0335007_0000036_61975_62481F036563N/AMNVQLNIEALKAKDCAFLSILDTSFYPVVPTSAEISITLPGFDDPFNFEFVVSEVNIFTAYSFGLTVEETDSFTPLPDGVYKLEFAPCPNVGVCTRYHLRTCKIDCRLGVQWAKHVDCCDDEKMLYYLDKIEFLLKGAEAHADLCNPAKATELYKKADDLLRRFELDC
Ga0335007_0000036_76181_76627F098950N/AMKKLFILSALVTMMTSLSAQCYKIDTVTSIATVTEIGGRPIIFGAQTTLEEIASAKYQLCNEGSPISGKIKSIAMPEQLVNIVGLQFLKREYIVSTEINVNGILLQGEASKVVYVNAMFVSVEGIPHNRKAYSKALEKSFKSGFESLK
Ga0335007_0000036_7827_8324F067544AGCAGMIDKWIYEDKLLNNGTTFSWTPKALEELDISEVISALKVARHSDPIKVIANPTPQPEIPITWVTEFIAKFSAKNIGVSGKTTDKVSVVKRLIKFLAEYDYTLDEIAKATDLYIDTLKGQGSIRYIRECGYFISKKIDGVEQSDLAKWCEELKNGTGPAYNSHQIL
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