NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0000360

Scaffold Ga0335007_0000360


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0000360 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34438
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (70.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F030765Metagenome184Y
F084135Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0000360_10538_10978F084135N/AMTNFQSQSKRSGDAFEELVYADLVSRGFLNIDRNYCFEDAGCEVDFRAHSDNGFEYVEAKGGVAGEGKRPGAQRTDNVKKAIANGALIKTYNTLYYVVYFSAKPEPGSYSDNMIKIALKNKIIDEVRYLEPKDNFKQYWLDFDKEF
Ga0335007_0000360_19039_19254F003688N/AMRRAFHSVTPPKGFTIELIDNEHFLTIKLNELKFAKMVHDDKIQALQYVLNLKKALEMEGAIVLVTREAIK
Ga0335007_0000360_9597_9707F030765AGGAMDTEEDFNLEDITNAIVNQAKAEVKSKFGNKKRHRQ
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