NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0001442

Scaffold Ga0335007_0001442


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0001442 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18410
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (22.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008751Metagenome / Metatranscriptome328Y
F035305Metagenome172N
F090396Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0001442_11798_12217F035305N/AMNTLAIWEIAPSKSEIETFAQNVANELSEGTIKAEDIAIKISVMENFTKTLRAKSEEHIIDFLDKCPKGKYDHLGANISLKDSQTYDYASYSPRWAELQAQIDILKAEQKEIEENGKKFERGAIPLKSYKQSYVITLNK
Ga0335007_0001442_13567_14058F090396AGGAGMCRYKDKGEPLPLRVIELIPVSERLPALTKLYGVEKISGILSIAITKALNNFNLRVGMSPEQIMNLSYELINDSEQDQLAIQDILLFLDGLPKFKYGKVYDRMDMPTFFEMLEKYREERHQAYINGKEEAHAQFKAMGDSNRTSQDVDKEANRNAMQQYLRTK
Ga0335007_0001442_6520_6738F008751GAGGMESIAIFLAGQAIAIIIGLISIYVKVSLKLKELEVRVNMVEKQDDIIAKKLDNIQTSLNKLFVSLENKQDRD
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