NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0002398

Scaffold Ga0335007_0002398


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0002398 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14842
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009885Metagenome / Metatranscriptome311Y
F030990Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0002398_10378_10665F009885N/AMTTTDWAQFILALLSIGAIIVSSIRWYIKVQIKPIAEAVEDIRKETKTNGGTSMRDEIKQIKIEQENARDKRKATSDKLDHMYDILLEYVSKNSK
Ga0335007_0002398_7129_7692F030990N/AMADVVLSNDDLTVLAGPSTVELLVDIGPTGTRGSKFFVGIGNPNSLSGLGQILNDMYIDTAPGPNYGYLYQYISAPGGSSWVEVLRVNPTIYSKLHTVTFASGTSAYAGNGSVVIPITDISTSAGLTAENFNVQYSIQNTKPLASSLSSVQISGTDLVINLEASEYDGTWGAFDAEVSVHIFVSVMI
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