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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034283 Open in IMG/M |
| Scaffold ID | Ga0335007_0002582 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14372 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (65.22%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001326 | Metagenome / Metatranscriptome | 721 | Y |
| F001872 | Metagenome / Metatranscriptome | 623 | Y |
| F002421 | Metagenome / Metatranscriptome | 560 | N |
| F003964 | Metagenome | 459 | Y |
| F044439 | Metagenome / Metatranscriptome | 154 | Y |
| F083894 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335007_0002582_12851_13099 | F083894 | N/A | MGNDFSNHVAGEEMTFDEKQTGATPIEIIDYLRGVIDTLRAEKALLEKRYKDLEASRETWQKLAQAWEWLADNKRIVPADEA |
| Ga0335007_0002582_13691_14089 | F002421 | AGGA | MKTCTICKETIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTKPEQNQVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELSYAQRGGAHDHAQRLSVWAGI |
| Ga0335007_0002582_1_348 | F044439 | GGAG | MNYLAEKIIGLVLCTVFGVTALTGAPSASSDVSSIMPLKPISVEPYLIEPPTTTSSTVYIDPYTSACEQFSALAINLGWPADQRTVLESVMARESGCRPNAHNKTLNRDKSQDWGL |
| Ga0335007_0002582_5234_5746 | F003964 | GGAG | VAEVSAKIEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPTGVPLSGMARNWQTRSGFQILPWIPGMKQKIAAKINTRAIKEYSGNKTNVGTFAIQWKGATGTMFDTSMSGSLGRALTARYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANRETA |
| Ga0335007_0002582_562_1002 | F001872 | AGCAGG | MNEFIKQVIHHSGGALWNNGSYGRRDMKGKPGSLSVHATGRAVDMSYRGDARHPQSSRKSALPFVEKLCANANELGIQMVIDYFPSPHGRAWRCDRQAWSKYTKPTVSGAPGGDWFHFEISPQAADSVIFVKAAFLKVFGEIPPKA |
| Ga0335007_0002582_7020_7652 | F001326 | GGAG | MATYTVTNKYLIDDFAVLQLLTPSEIAVGQSITVAGVDATFNGTYSVRALPQYLFIGVDTEGDLLYDYQMPVADQVLYAKTASDVERVAASGTVAYDPVCTWVTAAQVATYLGINIPNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSASQQSLTPIVKQLLGIPRPAVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |