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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034283 Open in IMG/M |
| Scaffold ID | Ga0335007_0003281 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12922 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001322 | Metagenome | 722 | Y |
| F005585 | Metagenome / Metatranscriptome | 395 | Y |
| F014016 | Metagenome / Metatranscriptome | 266 | N |
| F014613 | Metagenome / Metatranscriptome | 261 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335007_0003281_1037_1237 | F014016 | GGA | MINKVTLIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKQQLRGRLSKAEISAYWLDKYGVNADVA |
| Ga0335007_0003281_332_886 | F005585 | AGAAG | VNGLKKLVLPYSTEGLSMETRGTIFYAFTKSREHSVFSSETHLNWQLLLLQQNSQEWWKVQSARIRISISLDMPLSWVDADFLHQKIGTTLSLTRNHNSNQYCDYCKYRWGANKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAISDFAGREKLDVQLP |
| Ga0335007_0003281_3673_4920 | F001322 | AGG | MTLWSPTYRVKVNGSTVTTATLSGLTITSGRFDIYSQPVAGYCNLSLLETNSSQVGYEINDSVTIEVLNASSNYVFLFGGFITDLSVVVATSGSTALSQRINIIAVGALARLNRAVFSGNLSHQFDGDRILELLEDVVLGSWNEVPAALTWASYDPTEQWQDALNTGLGQVDTPGNYELHSQNGVSGTVYDLVSAAATSGLGYIYEDAEGRIGYADSTHRTNYLATYGYVDLDGNHAFGSGLQIVKRAGDVRNALTVLYGADSDQVATDSDPDSIALYGELAAEVETTLRHLADAEDQAEFYLSLRAYPQYQLNTISFPIGSSEIDNADRNSLLGVFMGMPLNIVNLPANMGNGEFQGFVEGWTWTASLNSLTLTLNVSPIAYSLQAMRWNDVPAIETWNTILPDLTWLNATIVA |
| Ga0335007_0003281_883_1047 | F014613 | N/A | MLPNLSDEAVVGIIIGVPFIGLYIWSLITSAKAKAFNEGYKRGRSSVRYTEVLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |