NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335007_0016285

Scaffold Ga0335007_0016285


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0016285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5895
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F096527Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0016285_10_375F096527N/AMPQTLTEIADNAIIDIKVNKSFYFMVKNLGFTLFKLMSTEESNIFNEIMLKKDNSLLPDYNTLSEPQKNFYTVMLLLAEIEKEAIKNNLTQSKEVLMPEDEDFKVEDIQKEFDIPDPTTQ
Ga0335007_0016285_4229_4909F003038N/AMGLSTTDLGTGTGQPKTIAPGNHVLKINSLMLEDFQFIDGAKHLVLNVETEPISGFEGFWVDKDDESKGKHNGQIGRVKASQYAFADGETKSGIKIQRDRSMMIFMQNLCKALDINDWFIAQDGLHQTIDDLIIAFNKTADFKDNYLEFCVAGKEYIGKTGYTNYDMYLPKSEKGKYAYGEVEGGKVIQYTEALHLRKTEIKDVKAFGDDDSFSIPSKSSSDFSLD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.