Scaffold Ga0335007_0019221

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335007_0019221

Scaffold Ga0335007_0019221

Overview

Basic Information
Taxon OID	3300034283 Open in IMG/M
Scaffold ID	Ga0335007_0019221 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5398
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023571	Metagenome / Metatranscriptome	209	Y
F029416	Metagenome / Metatranscriptome	188	Y
F042214	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0019221_228_383	F042214	N/A	MQTFLTTEEILQLVTTGVCTLTDDLMLRMTEHYEDSEWYNDPNNVMSHHHY
Ga0335007_0019221_4430_4597	F029416	GAG	MADTLSKRIYRQLFSDAEWDLIYNFVGHALDDNEYDPEDVYAIRNKIHAIFDEEN
Ga0335007_0019221_719_973	F023571	N/A	MNFSSLTFSDHSVIKGGTKAQHTFENGWTISVVAGPKDSGLYGDIQHDTFEVAVIRPNGNMLEDVIIWQTPVQITTMMHLIEML

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