NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0024053

Scaffold Ga0335007_0024053


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0024053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4810
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015095Metagenome / Metatranscriptome257Y
F027413Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0024053_2488_3663F027413N/AMATGRDDIDLQCNAGYARMEIINLTNTPFDIDVTDALTLELKNSAGAYVPVFGGEVSDFGISVRSPEETGFITIGNILAVGSLAKLTKALFPDALAKDYDGNQIYDVLNELLINSWFEVAPALQWFNYDPTSTWANAENVGLGEIDQPGLYEMIARSADPASSYNLCAQIAQSAQGAIYEDKAGRVCYADTDHRTQYLSTYGYTTLSANYATPSTVKTILQIGKIRNSLVFNYGTNYNSQATALDADSIANYGRYQRSVTTNLHNLADVNTLMSRELGLRAIPREQLQSITFRLDNSDLPDAERDKLIDVFFGQPIVINDLPINMFNGSFNGFVEGFAIRATPGYVDLTLTLSPTDFSLVAPQWATVTPGSLIWTGVNATLIWQNAFGGLT
Ga0335007_0024053_437_673F015095AGGMETAQLAVGIALGSFTILGLGAGLIRHFVKYYLSELKPDGNGGHNLRGRIDHIEVRQERMDAKIDKIYEILLETRLAR
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