NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0024937

Scaffold Ga0335007_0024937


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0024937 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4719
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010599Metagenome / Metatranscriptome301Y
F032149Metagenome180Y
F045545Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0024937_1957_2076F045545AGGAGGMLKFFICKIKKHLLVDAGSCPFTRKNYNACLRCGVTIVK
Ga0335007_0024937_2052_2204F032149N/AMWSNNSKMKKKIIILSLSIISILVAISLFFASRLSKLSELDLFDIEEDDL
Ga0335007_0024937_2235_2597F010599AGGMEMMFLIFFATLSFSFGLSYWATFDKLKKSNLLLAELFIKNRALEELNSQANNRINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQETIKEVSDELRIKGLDNYSDKLLALLPEMDQGKK
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