NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0025008

Scaffold Ga0335007_0025008


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0025008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4710
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F015723Metagenome / Metatranscriptome252Y
F033779Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0025008_2721_3131F033779GAGMNWKRRKLQRSAVWIILIATLAAVSSCHSAKPILDSVIVRDTVIVTEPRYLIDTLEVMKDTTIYRDQVRVQLKYVDRKVVVEAMCDPDTIRVTQTKILTKQEPKRKAWNFDQLVFGSLIGLMIIYLFKRWVDKLTE
Ga0335007_0025008_3666_4037F009600GGAGGMYPHPNPKTYHVVVGKVPSLNQFYASKHWTFRSTAKNKHTAEILLQLEEYECVPIQHVYIRCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLSMEHDPDIHPDTAEIYFTGLVV
Ga0335007_0025008_4237_4668F015723N/AMAKIISITPKGQWQEFYKLEVRFDNGDFGTAFAKSPNPSYAVGDEVEYSKNEKGTIKIQRPNNFGGGTGGSFATASKSAGDERSASIIRQVALKAAVEYACAAKHDVPTILANADLFNKWMLGQSDDAISHSEHFASRNDSPF

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