NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0030551

Scaffold Ga0335007_0030551


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0030551 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4232
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0030551_2573_3184F004111AGGAMINQEKIKQVNDLCAAHGSYLNQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSFMGILLEDVTSKEEYEELEIPVQPMNTKGTSSANIRYDESTINELIKKVHYAPHTAKLDFLWRANKDLLNQIKIKDQSTYDSILNKFNSKRDEITTQNEV
Ga0335007_0030551_3153_3407F013409N/AMKIILTIIMMNGTIYNLGYEIDSYSPRICDKLFDKVTYIGKASGKNKYGTFYKSKEVFAHSCSIEKTTKGNNEGNDKSGKNKTS
Ga0335007_0030551_3404_3577F011150GGAMDTEYLVKQHNKITQQFRHDIIMRKLKEREDREFKNMFTKLLLIIVIALLLMTLIAR
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