NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0030929

Scaffold Ga0335007_0030929


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0030929 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4203
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018127Metagenome / Metatranscriptome236Y
F029017Metagenome / Metatranscriptome189Y
F031754Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0030929_2022_2468F031754AGGMSEKGGPVIMVAMLLGLFWLCSEPAKEPTQCDLPNPSLIEELATVKESFAVQPNHIVDANKMVDPQPSPSDKHEKTKREVLIFVSANCPPCEKWKRCEMQRFMDAGWAVGIVEVHSYELTPTFEIESGDKKATIKGYATLEQAAEAVR
Ga0335007_0030929_3437_3676F029017GGGGGMDELGFVTWKLVQLVLWAGPFGLAALLGAIGGAAFYAGYSMRPKPDKPMGAQKLDHIKYDILPDGTLGPGDPRGLEGPE
Ga0335007_0030929_3678_4052F018127GGAGMAAKKDNWIPWVIIGGLVLYAMAQKPKEGGDPSTAAAVSAAKQTIPNIRAAYREAFLDAAKGIEDGTIKDQEAWTEFIRQNAGARQRDALDKVYEAIDKLKLPVTFAGKESEIAKINREIAGAW
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