NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0033003

Scaffold Ga0335007_0033003


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0033003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4054
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026272Metagenome / Metatranscriptome198N
F027827Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0033003_1093_2058F026272N/AMNEIFADIILFDSIGMSYTGNTMHEKGMGGSEFQAILLLEELAKEGYKVICFNNCEKEIYINNVLYLPNVLVNKYKVKCKNLIIHRYSDIPKIAHKKAFMWATDLNGVHNLKFYKLFEEKKLSLITLSKFQDNLFPDHWNKHIIYFMIPDWVYDYPIPQNKKNYIYASSLMKGYPYTLQMWKYLKDEKILSGTDVLNVCLPGYDNPKNDITDVNYNVNYIGTLNFKEVVELMAKCKGMFYVNMMPETFGISVVLADILKTTPFIYGLNCLGSLPELINNNSLTSDMHTYINYFKNYAPNQQNPRNFRPQMVIKWWKKILEL
Ga0335007_0033003_3_263F027827N/AIINLPNAVEIQQAANSSQIEILQTTDDPVGKTVKSLVKISTNPYAHNWYTVWSGDTYDQAGQWTDAQLASAVVTLVTGEYPPALTR
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