NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0043190

Scaffold Ga0335007_0043190


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0043190 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3498
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058715Metagenome134N
F059002Metagenome134Y
F088293Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0043190_2494_2769F059002N/AMNILNEIKNGISRLLGVYKKVETKEAPRTLKPKRSPKRGRGRPKGLKIPRAIVDAVLQADKSVTNKQLAAKYRVSYYWVWSVRSKKLRLKR
Ga0335007_0043190_2936_3178F058715GGAGGVSLLEKLGLSKQSMERMLGVVAPLKKTKIKRYRRYETVPADIRKAILEEHSSYTCRELAKKYGISSSTIWDIRDSKSKIE
Ga0335007_0043190_3175_3330F088293GAGLDLPDFADYNDRRELRAIALDVRKLEDRVKQLEQENDSMRADLLLWGEAKP
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