NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0049275

Scaffold Ga0335007_0049275


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0049275 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3252
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0049275_1547_1708F030767GAGGMAYKTKCRLCAKVTEHIERIVTDNLPPNVKSLQCVKCGVMGIVLMEDVKNADV
Ga0335007_0049275_2380_2994F007029GAGMGFLDNYEDVNARIKRFRSEFPSGRLVAYIEDIDIIKGTILVKAEAYREYEDNVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRVIGLLTPSLEHNSRPTVQDMQKVETLPADSDPWSKKASIEDMSTMATAILEIGTQLGGELVAEAPRCPHGTMVWAEGTAKTTGKPWAAYKCTEKIRANQCQPYWHVLGSDGKWKPQV
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