NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0051389

Scaffold Ga0335007_0051389


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0051389 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3176
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006785Metagenome / Metatranscriptome364Y
F068609Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0051389_1141_1524F068609GGAMTILKTTEPYGSFRVTYETVTTESAEQGDYAEHGWLSWNGCPCDDYAESCWDLRDLLDKLAGCYAEGDGATVPRWLSLDPQSDFWLSPFWRDLAGEDALGVTASVHRPDWITDSSWIRVCRLLGWRC
Ga0335007_0051389_300_728F006785GGAGMTGGEWTTRGQQKEAREAEREHLRLMKRHHRDLRWAVERSKLEASDWADLLALQAELGKEGPLQLWRELIPYWRQCQALNGGADLPAELFPQATGVFSRDTSPAPAAPATRAKAGKGSPRKVRSDAGVAKPSRKGSSAKGAA
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