NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0068382

Scaffold Ga0335007_0068382


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0068382 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2698
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043354Metagenome / Metatranscriptome156Y
F098653Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0068382_1059_1271F098653N/AMCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPEYIFNVDYYNKWTNFNTGLLDKIRDYQKYNM
Ga0335007_0068382_2343_2696F043354N/AMEKLKQSIKEYQTSSKTYIKYDTDGYNQYQNYLYKRALHGLSAMTEKEIATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDVSIINTLNFKD
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