NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0074435

Scaffold Ga0335007_0074435


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0074435 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2566
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026860Metagenome196Y
F074557Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0074435_1487_1960F074557AGGMTLVLALSAALLTSEAIPEQTLQAVEQVESSGRGASTPRGDGGKALGCLQWHAVAWKDCSAIRRKVGLAVYPYADAAVPAKARDYARTWLTVLKVRLAGEIGRQPHPGEIWLAWNLGWTGFGRYGFQWAEVPSAKFNKARQVNTLAWGLPKRPAVAR
Ga0335007_0074435_910_1404F026860N/AMTDSNSIVQRLLKELSNEPKDYPCPKGWFTVEQIRVELDMAHTRNASSRALDLQRRGLLERQPHQFKSGTGQCHMAYVYRPVPPYKSIKQAAAQMFAHRSDKVPKGWVRLVDYAVSKNVSDVAVRGRVARAGLKPKYWKTPRGIIGLHLNAYYLKADLDRLYKA
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