NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0305130

Scaffold Ga0335013_0305130


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0305130 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1012
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046829Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0305130_387_1010F046829N/ALAHNNAAAKGEKTKEQYDKKTMPHNFQIGDKVLIANDFDTTKNPKLVPNWKGPGEIIDINDTNAKIKFKNKVKVLNVAKLKHFYENVEKSAEKESEAENFNQDFNQQSEKARPDFNDFNDIFNKAHNEGPITRAKAKLIKYKDAAQLALLLLKSEKDTIDSLCDPSDHCGCCESEETYLAESKTLPFQWRQLKLAENCCKQWRLKLMR
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